BADGE Bayesian Analysis of Differential Gene Expression




	Sebastiani, P, Ramoni, M and Kohane IS. Bayesian Analysis of Differential Gene Expression. Under review.
		The paper describing the method and its application to the analysis of differential gene expression experiments.



	Comparison with stochastic computations.

	Evaluation with the spiked-in experiment
		Data (txt file)
		Original Latin Square Design
		Arrangement of the spiked-in genes in groups
		List of spiked-in genes
		Examples of patterns of the spiked-in genes
		R-functions to run BADGE
		R-functions to run the experiments
	Other Data Sets
		Prostate cancer data set and lymphoma data set are avaialble from the Cancer Genomic Group, The Broad Institute