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M. Ramoni, P. Sebastiani and I. Kohane. Cluster Analysis of Gene Expression Dynamics. Proc Natl Acad Sci USA, 99(14):9121-6. 2002 (Cover Article) [WWW]
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The paper describing the application of CAGED to the analysis of temporal profiles of gene expression data. |
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Crunching Gene Chips, Science, 297:307 19 July 2002. [PDF]
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Group Thinks Outside the Box, BioIT World, Sept 2002. [WWW]
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CAGED User Manual. August 2001. [PDF]
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Program documentation included in the distribution. Useful if you want to take a sneak peak at the program. |
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M. Ramoni and P. Sebastiani. Bayesian Methods for Intelligent Data Analysis. In M. Berthold and D.J. Hand, editors, Intelligent Data Analysis: An Introduction, Springer, New York, NY, 1999. [PDF]
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A general introduction to Bayesian data analytic methods, explaining some important concept used in CAGED. |
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M. Ramoni, P. Sebastiani and P. Cohen. Bayesian Clustering by Dynamics. Machine Learning. 47(1):91-121, 2002. [PDF]
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The description of Bayesian Clustering by Dynamics. Not really the method used by CAGED but a general framework for it. |
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