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M. Ramoni, P. Sebastiani and
I. Kohane. Cluster Analysis of Gene Expression Dynamics. Proc Natl
Acad Sci USA, 99(14):9121-6. 2002 (Cover Article) [WWW] |
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The paper describing the
application of CAGED to the analysis of temporal profiles of gene
expression data. |
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Crunching Gene Chips, Science,
297:307 19 July 2002. [PDF] |
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Group Thinks Outside the Box,
BioIT World, Sept 2002. [WWW] |
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CAGED User Manual. August 2001.
[PDF] |
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Program documentation included
in the distribution. Useful if you want to take a sneak peak at the
program. |
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M. Ramoni and P. Sebastiani.
Bayesian Methods for Intelligent Data Analysis. In M. Berthold and
D.J. Hand, editors, Intelligent Data Analysis: An Introduction, Springer,
New York, NY, 1999. [PDF] |
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A general introduction to
Bayesian data analytic methods, explaining some important concept
used in CAGED. |
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M. Ramoni, P. Sebastiani and
P. Cohen. Bayesian Clustering by Dynamics. Machine Learning. 47(1):91-121,
2002. [PDF] |
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The description of Bayesian
Clustering by Dynamics. Not really the method used by CAGED but a
general framework for it. |
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