CAGED stands for Cluster Analysis of Gene Expression Dynamics. CAGED is a computer program for the analysis of temporal gene expression data. Some of the data used for the program is saved at

CAGED is based on a method called Bayesian Clustering by Dynamics, which identifies the most probable set of clusters given a set of time series. Although CAGED is designed for temporal data, it can be used as a Bayesian clustering program on a-temporal expression data.

CAGED v 1.0 requires MS Windows 95/NT/98/ME/2000, at least 128 MB of RAM and a 300 Mhz processor.

CAGED is distributed free of chage to academic and other non-profit organizations. Here is a partial list of CAGED users. For commercial use in for-profit organizations, contact the developers.


Read about the theory and the methods behind CAGED and learn how to use the program.


Register and download your copy of CAGED v1.0 for Academic use and start using it.

Guided Tour

Take a guided tour of CAGED and get a sneak view of the program main interface.


Read about people, institutions and sponsors responsible for the develpment of CAGED.


Got a question? Need help? Here are several ways to contact us.


Copyright © 2002 by The CAGED Team. All rights reserved.

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